In present investigation seeds of Soyabean and Groundnut were acquired from the oil seed research centre in Latur and examined for seed born mycoflora at Swami Ramanand Teerth Marthwada University Nanded's department of Botany. Using the traditional blotter and agar plate technique. When Aspergillus and Rhizopus are discovered in all kinds of seed. from Soyabean samples, fungal species were identified: Aspergillus, Rhizopus, Curvularia, Penicillium, Mucor, and Fusarium spp. fungus species were detected from Arachis hypogea samples: Aspergillus, Rhizopus, Penicillium, Curvularia, and Fusarium spp. Present study concluded that high moisture seeds of both Soyabean and Groundnut more susceptible to fungal contamination.